30:T562,printTCGA = function(projectData) { let div = DOM.element('div') // set up the main object div.innerHTML='

TCGA Project types in GDC ()

TARGET Project types in GDC ()

TARGET Primary Sites()

' //formatting the titles above let ol=DOM.element('ol') // set up the sub-object which will contain our data div.appendChild(ol) //added sub-object to the main object let caseCount=0 projectData.data.hits.forEach(function(prj,i){ // for each hit (project) if ((/TRUE/.test(prj.released))) { //if the object is data from TCGA let li = DOM.element('li') // build up the header "li" (list item) li.innerHTML=`${prj.state}: ${prj.primary_site} (${prj.summary.case_count})` //formats all the blue headers caseCount=caseCount+prj.summary.case_count ol.appendChild(li) // append the header "li" to the larger object "ol" let ul = DOM.element('ul') // build up the bullets "ul" //case.disease_type.forEach(function(dtp){ // for each disease_type //let li = DOM.element('li') //li.style.fontSize='small' //li.innerHTML=dtp //ul.appendChild(li) // append one bullet "li" to the list of bullets "ul" //}) //li.appendChild(ul) // append the bullets "ul" to the header "li" } }) div.querySelector('#caseCountSpan').textContent=caseCount return div };33:[] 2e:{"title":"Web Genomics ","cells":[{"id":0,"value":"md`# Web Genomics `\n\n","pinned":false,"hidden":false,"mode":"ojs"},{"id":27,"value":"md`*Notebook for WebGenomics (Vertically Integrated Project (VIP) at Stony Brook University)*`\n","pinned":false,"hidden":false,"mode":"ojs"},{"id":35,"value":"md`**Functions Used Below**`","pinned":false,"hidden":false,"mode":"ojs"},{"id":16,"value":"projectData=(await fetch('https://api.gdc.cancer.gov/projects?fields=disease_type,name,program.name,project_id,summary.case_count&from=0&size=1000&sort=disease_type:asc')).json()\n","pinned":false,"hidden":false,"mode":"ojs"},{"id":43,"value":"md`JSON used to send data\n\n**J**ava**S**cript **O**bject **N**otation (JSON)`","pinned":false,"hidden":false,"mode":"ojs"},{"id":21,"value":"$30","pinned":false,"hidden":false,"mode":"ojs"},{"id":95,"value":"md`\n*The \"TCGA\" section below is from Richard Moffit's Observable*\n\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":24,"value":"printTCGA(projectData);","pinned":false,"hidden":false,"mode":"ojs"},{"id":50,"value":"md`### TARGET List`","pinned":false,"hidden":false,"mode":"ojs"},{"id":97,"value":"md`#### Replaced TCGA with TARGET\n\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":52,"value":"$31","pinned":false,"hidden":false,"mode":"ojs"},{"id":55,"value":"printTARGET(projectData);","pinned":false,"hidden":false,"mode":"ojs"},{"id":57,"value":"md`### Print Primary Site Instead of Disease Type`","pinned":false,"hidden":false,"mode":"ojs"},{"id":59,"value":"$32","pinned":false,"hidden":false,"mode":"ojs"},{"id":66,"value":"printPrimary(projectData);","pinned":false,"hidden":false,"mode":"ojs"},{"id":82,"value":"md`\n1. Figure out how to print primary site instead\n1. Figure out how to print out each case and bullets underneath with information about them\n1. Analyze based on top mutations of genes(/analysis\n/top_mutate\nd_genesby\nproject)\n\n\n`","pinned":false,"hidden":false,"mode":"ojs"}],"files":"$W33","stdlib":"1","titling":"auto"}