30:[] 2e:{"title":"Elixir live!","cells":[{"id":0,"value":"# Elixir ^live!\n\nStudying Elixir and Elixir related resources.\nThese Notes were started at Elixir meeting Nov 21, 2023. See also\nhttps://github.com/GenomicDataInfrastructure and https://providers.eosc-portal.eu/openapi.\n## Checking EOSC\nEuropean Open Science Cloud, see how interoperability model is conceived and engaged by API calls. For example,","pinned":false,"hidden":false,"mode":"md"},{"id":82,"value":"### CORS enabled fetch\nCan we pretty please get CORS by default?","pinned":false,"hidden":false,"mode":"md"},{"id":75,"value":"fetchProxy = async function (url) {\n return (\n await fetch(\n `https://proxy.jalmeida.workers.dev?${encodeURIComponent(url)})`\n )\n ).json();\n}","pinned":false,"hidden":false,"mode":"ojs"},{"id":89,"value":"cancerSources = fetchProxy(\n \"https://api.open-science-cloud.ec.europa.eu/action/catalogue/filters?query=Cancer&catalogue=datasources&\"\n)","pinned":true,"hidden":false,"mode":"ojs"},{"id":92,"value":"cancer = fetchProxy(\n \"https://api.open-science-cloud.ec.europa.eu/action/catalogue/filters?query=Cancer\"\n)","pinned":true,"hidden":false,"mode":"ojs"},{"id":26,"value":"## Beacon - first impressions.\nStart with resource at the initiative's base URL at beacon-network.org. Note that domain is also used as the base URL, for example beacon-network.org/#/search?pos=32936732&chrom=13&allele=C&ref=G&rs=GRCh37. Check console for logs of APIs being called. The first call is a for the array of ${beaconResources.length} resources/ organizations:","pinned":false,"hidden":false,"mode":"md"},{"id":41,"value":"beaconResources = (await fetch(\"https://beacon-network.org/api/beacons\")).json()","pinned":false,"hidden":false,"mode":"ojs"},{"id":57,"value":"beaconOrgs = (\n await fetch(\"https://beacon-network.org/api/organizations\")\n).json()","pinned":false,"hidden":false,"mode":"ojs"},{"id":45,"value":"Lets pick a resource, for example COSMIC:","pinned":false,"hidden":false,"mode":"md"},{"id":47,"value":"cosmic = beaconResources.filter((x) => x.id == \"cosmic\")[0]","pinned":false,"hidden":false,"mode":"ojs"},{"id":60,"value":"... and query for the G>C mutation in chr 13 position 32936731 at the University Medical Center Groningen, in The Netherlands:","pinned":false,"hidden":false,"mode":"md"},{"id":63,"value":"q1 = (\n await fetch(\n \"https://beacon-network.org/api/responses?allele=C&beacon=[molgenis-emx2,mssng-db6,mygene2,myvariant,tsri-cadd]&chrom=13&pos=32936731&ref=GRCh37&referenceAllele=G\"\n )\n).json()","pinned":false,"hidden":false,"mode":"ojs"}],"files":"$W30","stdlib":"1","titling":"auto"}