30:T5e4,html`

NoSQL bindings for GraphQL

As the API for Data Commons CLouds like Gen3 (see peregrine microservice).

RDF/SPARQL - GraphQL for Semantic Web is an evolving domain, here's an interresting discussion of Querying DBpedia with GraphQL, with an interrestign subtitle Cause getting your JSON-LD should be simple :-D! and a demo at hypergraphql.org.

... find your own ...

`31:[] 2e:{"title":"GraphQL","cells":[{"id":0,"value":"md`\n# GraphQL\nExploring GraphQL to harmonize querying multiple NoSQL backends. This is an exploratory exercise during the two-day face to face meeting of the PRISM project.\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":31,"value":"$30","pinned":false,"hidden":false,"mode":"ojs"},{"id":85,"value":"html`\n

Playgrounds & backends

GraphqlBin

scaphold.io <-- full aaS!

Article on setting serverless GraphQL on GCP.

Notice how GDC is GraphQL centric, all the way to data submission!

...

\n\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":103,"value":"html`\n

Miscelaneous

API Gateway favored by NIH, data.gov and others: apiumbrella.io.

\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":215,"value":"GDC_example= (await fetch('https://api.gdc.cancer.gov/files/d853e541-f16a-4345-9f00-88e03c2dc0bc?pretty=true')).json()","pinned":false,"hidden":false,"mode":"ojs"},{"id":95,"value":"html`\n

PRISM APIs

Finally getting serious ...

cancerimagingarchive.net relies on a REST API at services.cancerimagingarchive.net/services/v3.

\nwaiting for an API key to make calls like https://services.cancerimagingarchive.net/services/v3/TCIA/query/getPatientStudy?Collection=TCGA-GBM&PatientID=GBM-0123&format=json ...\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":116,"value":"html`\n

PRISM Data Commons

This is completely experimental, using scaphold.io as the instance of a GraphQL data layer.

\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":179,"value":"\nprismQuery={\n /*\n let ifr=DOM.element('iframe')\n ifr.width=\"100%\"\n ifr.height=\"400px\"\n //ifr.src=\"https://us-west-2.api.scaphold.io/graphql/prism\"\n //ifr.src=\"https://graphqlbin.com/R6XWSG\"\n ifr.sandbox=\"allow-same-origin allow-scripts\"\n return ifr\n */\n let div = DOM.element('div')\n let a = DOM.element('a')\n a.href=\"https://us-west-2.api.scaphold.io/graphql/prism\"\n a.target=\"_blank\"\n let im = DOM.element('img')\n im.src='https://mathbiol.github.io/graphql/GraphiQL.png'\n a.appendChild(im)\n return a\n}","pinned":false,"hidden":false,"mode":"ojs"},{"id":122,"value":"html`\n

CPTAC

Comment by Ashish - how would any of this help with, for example, CPTAC ? Using the devtools (Network tab) on the data query tool will reveal and API at cptac-data-portal.georgetown.edu/cptac/Study/listJSON. Let's give it a try starting with this api call (Ashsish warned it wasn't ready, so this is a placeholder for when it is):

\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":147,"value":"cptacLanding={\n let url='https://cptac-data-portal.georgetown.edu/cptac/Study/listJSON?scope=null&sEcho=1&iColumns=3&sColumns=%2C%2C&iDisplayStart=0&iDisplayLength=-1&mDataProp_0=0&mDataProp_1=1&mDataProp_2=2'\n return (await fetch(url).catch(err=>{return {\"failed\":\"CORS not enabled :-(\"}}))\n}","pinned":false,"hidden":false,"mode":"ojs"},{"id":211,"value":"html`\n

i2Workshop

BMI@StonyBrook's hands-on i2Workshop session.

\n`","pinned":false,"hidden":false,"mode":"ojs"}],"files":"$W31","stdlib":"1","titling":"auto"}