30:[] 2e:{"title":"GTEx","cells":[{"id":0,"value":"md`# GTEx`","pinned":false,"hidden":false,"mode":"ojs"},{"id":11,"value":"html`\n

\nHi Ludmila, I had a look at GTEx as promised and these are my notes on the ability to engage it directly as a Cloud resource. I found two APIs, one native to the GTEx project, the other as part of a eQTL partnership with Emsembl. Both APIs in good order, ready to use in exploratory projects. Let me know if you have something in mind you'd like to try as a pilot test.\n

\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":38,"value":"html`\n

1. APIs

1.1 GTEx

\nChecking if GTEx can be caled directly:\n

\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":15,"value":"dt = (await fetch('https://gtexportal.org/rest/v1/association/egene?tissueSiteDetailId=All&draw=1&columns=&order=&start=1&length=&search=&sortDirection=asc&page=0&pageSize=1000&_=1554000206491&v=clversion')).json()","pinned":true,"hidden":false,"mode":"ojs"},{"id":41,"value":"html`\n

1.2. Ensembl

\nNext I had a look at what other API's may be available to traverse this dataset. It turns out Ensembl has a partnership with GTEx and makes its data available through its own API.\n

\n`","pinned":false,"hidden":false,"mode":"ojs"},{"id":49,"value":"tissues = (await fetch('https://rest.ensembl.org/eqtl/tissue/homo_sapiens?content-type=application/json')).json() ","pinned":false,"hidden":false,"mode":"ojs"},{"id":67,"value":"md`\n## Question from Daina Eiser \nHow can I acces pancreatic tissue and HNF1A gene expression\n`","pinned":false,"hidden":false,"mode":"ojs"}],"files":"$W30","stdlib":"1","titling":"auto"}