30:T60c,scatter = (data, color_by, kinases) => { const k_set = new Set(kinases); const height = 600; const margin = { top: 30, right: 50, bottom: 30, left: 50 }; const svg = d3.create("svg").attr("viewBox", [0, 0, width, height]); const x = d3 .scaleLinear() .domain(d3.extent(data.map(d => d.x))) .range([margin.left, width - margin.right]); const y = d3 .scaleLinear() .domain(d3.extent(data.map(d => d.y))) .range([margin.top, height - margin.bottom]); const node = svg.append("g"); node .selectAll("g") .data(data) .join("g") .append("g") .call(g => g .append("circle") .join("circle") .attr("class", "halo") .attr("cx", d => x(d.x)) .attr("cy", d => y(d.y)) .attr("r", 10) .attr("opacity", d => (k_set.has(d.name) ? 0.5 : 0)) .style("fill", d => d[color_by]) ) .call(g => g .append("circle") .join("circle") .attr("class", "node") .attr("cx", d => x(d.x)) .attr("cy", d => y(d.y)) .attr("r", 5) .style("fill", d => d[color_by]) .append("title") .text(d => d.name) ); // .call(g => // g // .append("text") // .attr("class", "label") // .attr("x", d => x(d.x)) // .attr("y", d => y(d.y)) // .attr("dy", -12) // .attr("text-anchor", "middle") // .style("font", "13px sans-serif") // .style("fill-opacity", 0.6) // .text((d, i) => d.name) // ); return svg.node(); }31:[{"id":"9b5c6efb1575345975d236993f4c60ebb910e9c7da5f95464247491e3c25fb7052f2335e35fee74a7616aacbe591cf85a85e4a8506f50e138b434eb52c41e074","href":"https://static.observableusercontent.com/files/9b5c6efb1575345975d236993f4c60ebb910e9c7da5f95464247491e3c25fb7052f2335e35fee74a7616aacbe591cf85a85e4a8506f50e138b434eb52c41e074","name":"wgcna_archs4_annotated.json","type":"application/json","lastModified":1592619338951.707,"size":66339},{"id":"cfb38be9cea7fe7c0c0e1dfac2b77270aa7f39dd9222c35981e779a4bda312add00720a5b78c91a1507825276fc6097595c8aaa1cc33d802c2724db7c56aa30b","href":"https://static.observableusercontent.com/files/cfb38be9cea7fe7c0c0e1dfac2b77270aa7f39dd9222c35981e779a4bda312add00720a5b78c91a1507825276fc6097595c8aaa1cc33d802c2724db7c56aa30b","name":"wgcna_tcga_annotated.json","type":"application/json","lastModified":1592883972393.081,"size":43244},{"id":"aaa48b069d91141c1762ab63ecd191046424209258eb9b63fe7df773c32681a5b7d9da2e3d84b3f0d5ac2e15f2f4b4d9ab45ead00323fcec86d9b592f6eb8a34","href":"https://static.observableusercontent.com/files/aaa48b069d91141c1762ab63ecd191046424209258eb9b63fe7df773c32681a5b7d9da2e3d84b3f0d5ac2e15f2f4b4d9ab45ead00323fcec86d9b592f6eb8a34","name":"wgcna_gtex_annotated4.json","type":"application/json","lastModified":1592883972562.097,"size":96284}] 2e:{"title":"KEA3 network","cells":[{"id":0,"value":"md`# KEA3 network`","pinned":false,"hidden":false,"mode":"ojs"},{"id":104,"value":"md`Global network from [KEA3 web](https://amp.pharm.mssm.edu/kea3/) project`","pinned":false,"hidden":false,"mode":"ojs"},{"id":108,"value":"md`Input list of kinases to highlight on the networks`","pinned":false,"hidden":false,"mode":"ojs"},{"id":114,"value":"kinases = ['CDK2', 'MARK4', 'TYK2']","pinned":true,"hidden":false,"mode":"ojs"},{"id":23,"value":"md`## ARCHS4`","pinned":false,"hidden":false,"mode":"ojs"},{"id":66,"value":"viewof archs4_color_by = html``","pinned":false,"hidden":false,"mode":"ojs"},{"id":32,"value":"scatter(\n await FileAttachment('wgcna_archs4_annotated.json').json(),\n archs4_color_by,\n kinases\n)","pinned":true,"hidden":false,"mode":"ojs"},{"id":45,"value":"md`## GTEx`","pinned":false,"hidden":false,"mode":"ojs"},{"id":75,"value":"viewof gtex_color_by = html``","pinned":false,"hidden":false,"mode":"ojs"},{"id":53,"value":"scatter(\n await FileAttachment('wgcna_gtex_annotated4.json').json(),\n gtex_color_by,\n kinases\n)","pinned":false,"hidden":false,"mode":"ojs"},{"id":56,"value":"md`## TCGA`","pinned":false,"hidden":false,"mode":"ojs"},{"id":76,"value":"viewof tcga_color_by = html``","pinned":false,"hidden":false,"mode":"ojs"},{"id":61,"value":"scatter(\n await FileAttachment('wgcna_tcga_annotated.json').json(),\n tcga_color_by,\n kinases\n)","pinned":false,"hidden":false,"mode":"ojs"},{"id":2,"value":"$30","pinned":false,"hidden":false,"mode":"ojs"},{"id":6,"value":"d3 = require(\"d3@5\")","pinned":false,"hidden":false,"mode":"ojs"}],"files":"$W31","stdlib":"1","titling":"auto"}