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2d:{"title":"Multi IRIX File Preview","cells":[{"id":3,"value":"# Multi IRIX File Preview","pinned":false,"hidden":false,"mode":"md"},{"id":733,"value":"## Metadata","pinned":false,"hidden":false,"mode":"md"},{"id":702,"value":" | | \n-------- | -------- \nOrganisation reporting | **${metadata.OrganisationReporting.content}** \nDate and time of creation | **${metadata.DateAndTimeOfCreation.content}**\nReport context | **${metadata.ReportContext.content}**\nReport UUID | **${metadata.ReportUUID.content}**\nConfidentiality | **${metadata.Confidentiality.content}**\nContent provider | **${metadata.ContentProvider.content}**\n","pinned":false,"hidden":false,"mode":"md"},{"id":801,"value":"viewof aggType = Inputs.radio([\"max\", \"mean\", \"median\"], {\n value: \"max\",\n label: \"Aggregation type:\"\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":799,"value":"## Global map","pinned":false,"hidden":false,"mode":"md"},{"id":400,"value":"globalMap.legend(\"color\", {\n label: \"Dose rate in (Sv/h)\",\n width: 320,\n tickFormat: \",.3~s\"\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":388,"value":"globalMap = Plot.plot({\n color: {\n type: \"threshold\",\n scheme: \"orrd\",\n domain: [0.25, 0.5, 0.75, 0.95, 0.99].map((d) => d3.quantile(values, d))\n },\n projection: {\n type: \"equal-earth\",\n domain: bbox\n // inset: -40 * (zoom - 1) ** 2,\n // rotate: [rotateX, rotateY]\n },\n marks: [\n Plot.geo(land, { fill: \"#eee\", stroke: \"#aaa\", strokeWidth: 0.5 }),\n Plot.graticule(),\n Plot.dot(\n data,\n Plot.hexbin(\n {\n fill: (g) => d3[aggType](g, (d) => d.Value)\n },\n {\n x: \"Longitude\",\n y: \"Latitude\",\n fillOpacity: 0.9,\n symbol: \"hexagon\",\n stroke: \"black\",\n strokeWidth: 0.5,\n strokeOpacity: 0.5,\n binWidth: 6\n }\n )\n ),\n Plot.sphere({ strokeWidth: 0.5 })\n ]\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":466,"value":"## Exploratory Data Analysis (EDA)","pinned":false,"hidden":false,"mode":"md"},{"id":500,"value":"viewof search = Inputs.search(\n locations.sort((a, b) => a.Name.localeCompare(b.Name)),\n {\n placeholder: \"Search location name\"\n }\n)","pinned":false,"hidden":false,"mode":"ojs"},{"id":1347,"value":"And select the station of interest (check):","pinned":false,"hidden":false,"mode":"md"},{"id":490,"value":"viewof rows = Inputs.table(search)","pinned":false,"hidden":false,"mode":"ojs"},{"id":591,"value":"// https://observablehq.com/@harrystevens/d3-geocircle\nviewof kms = Inputs.range([1, 1000], {\n value: 20,\n step: 1,\n label: \"Radius around (km)\"\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":532,"value":"localMap = Plot.plot({\n color: {\n type: \"threshold\",\n scheme: \"orrd\",\n domain: [0.25, 0.5, 0.75, 0.95, 0.99].map((d) => d3.quantile(values, d))\n },\n projection: {\n type: center ? \"azimuthal-equidistant\" : \"equal-earth\",\n rotate: center ? center.map((d) => -d) : [0, 0],\n domain: center ? circle : bbox,\n inset: 10\n },\n marks: [\n Plot.geo(land, { fill: \"#eee\", stroke: \"#aaa\", strokeWidth: 0.5 }),\n Plot.graticule(),\n Plot.dot(\n center ? dataSelected : data,\n Plot.hexbin(\n {\n fill: (g) => d3[aggType](g, (d) => d.Value)\n },\n {\n x: \"Longitude\",\n y: \"Latitude\",\n fillOpacity: 0.9,\n symbol: \"hexagon\",\n stroke: \"black\",\n strokeWidth: 0.5,\n strokeOpacity: 0.5,\n binWidth: 6\n }\n )\n ),\n Plot.sphere({ strokeWidth: 0.5 }),\n center\n ? Plot.geo(circle, {\n stroke: \"#555\",\n strokeWidth: 1\n })\n : null\n ]\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":846,"value":"Measurements within defined radius of **${kms}** kilometers around **${rows[0].Name}**:","pinned":false,"hidden":false,"mode":"md"},{"id":1028,"value":"","pinned":false,"hidden":false,"mode":"html"},{"id":668,"value":"// add value formating\nviewof rowsSelected = Inputs.table(dataSelected, {\n columns: [\n \"Location\",\n \"Name\",\n \"Value\",\n \"ValueUnit\",\n \"StartTime\",\n \"Longitude\",\n \"Latitude\"\n ],\n sort: [\"Value\", \"StartTime\"],\n reverse: true\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":1209,"value":"viewof fromDateTime = Inputs.datetime({ label: \"Start\", value: d3.min(time) })","pinned":false,"hidden":false,"mode":"ojs"},{"id":1486,"value":"formatter = d3.format(\".2e\")","pinned":true,"hidden":false,"mode":"ojs"},{"id":1488,"value":"formatter(0.0000234)","pinned":true,"hidden":false,"mode":"ojs"},{"id":982,"value":"timeValueAgg.legend(\"color\", {\n label: `Number of measurements`,\n width: 320,\n tickFormat: \"~s\"\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":861,"value":"timeValueAgg = Plot.plot({\n color: {\n scheme: \"orrd\",\n type: \"log\"\n },\n y: {\n type: \"linear\",\n\n // tickFormat: \"~s\",\n tickFormat: \".2e\",\n\n label: \"Concentration (Sv/s) ↑\"\n },\n x: { tickFormat: Plot.formatAuto },\n marks: [\n Plot.rect(\n dataSelected.filter((d) => d.StartTime > fromDateTime),\n Plot.bin(\n { fill: \"Count\" },\n { x: \"StartTime\", y: \"Value\", thresholds: 40 }\n )\n )\n ],\n marginLeft: 80,\n height: 400,\n width: 600\n})","pinned":true,"hidden":false,"mode":"ojs"},{"id":1044,"value":"Plot.plot({\n // x: {\n // type: \"utc\"\n // },\n y: {\n grid: true,\n inset: 6\n },\n marks: [\n Plot.boxY(\n dataSelected.filter((d) => d.StartTime > fromDateTime),\n { x: \"StartTime\", y: \"Value\" }\n )\n ]\n})","pinned":true,"hidden":false,"mode":"ojs"},{"id":1248,"value":"viewof yScaleType = Inputs.radio([\"linear\", \"log\"], {\n value: \"linear\",\n label: \"Y scale type\"\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":1077,"value":"hexTimeChart.legend(\"color\", {\n label: `Number of measurements`,\n width: 320,\n tickFormat: \"~s\"\n})","pinned":false,"hidden":false,"mode":"ojs"},{"id":1040,"value":"hexTimeChart = Plot.plot({\n // width: width,\n x: {\n type: \"utc\"\n },\n color: { scheme: \"OrRd\" },\n y: {\n type: yScaleType,\n tickFormat: \"~s\",\n label: \"Dose rate ↑\",\n // grid: true,\n inset: 6\n },\n marks: [\n Plot.dot(\n dataSelected.filter((d) => d.StartTime > fromDateTime),\n Plot.hexbin(\n // { fill: \"count\", r: \"count\" },\n { fill: \"count\" },\n {\n x: \"StartTime\",\n y: \"Value\",\n symbol: \"hexagon\",\n fillOpacity: 0.9,\n stroke: \"black\",\n strokeWidth: 0.5,\n strokeOpacity: 0.8,\n binWidth: 7\n }\n )\n )\n ]\n})","pinned":true,"hidden":false,"mode":"ojs"},{"id":882,"value":"timeChart = Plot.plot({\n style: \"overflow: visible;\",\n y: { grid: true, type: \"linear\", tickFormat: \"~s\", label: \"Dose rate ↑\" },\n marks: [\n Plot.ruleY([0]),\n Plot.lineY(\n dataSelected.filter((d) => d.StartTime > fromDateTime),\n {\n x: \"StartTime\",\n y: \"Value\",\n stroke: \"Name\",\n sort: \"StartTime\",\n tip: \"x\"\n }\n ),\n Plot.dot(\n dataSelected.filter((d) => d.StartTime > fromDateTime),\n {\n x: \"StartTime\",\n y: \"Value\",\n stroke: \"Name\",\n sort: \"StartTime\",\n fill: \"Name\",\n r: 2,\n tip: \"x\"\n }\n )\n // Plot.text(\n // dataSelected,\n // Plot.selectLast({\n // x: \"StartTime\",\n // y: \"Value\",\n // z: \"Name\",\n // text: \"Name\",\n // textAnchor: \"start\",\n // dx: 5\n // })\n // )\n ]\n})","pinned":true,"hidden":false,"mode":"ojs"},{"id":1255,"value":"Plot.plot({\n width: width,\n tip: true,\n y: { grid: true, type: yScaleType, tickFormat: \"~s\", label: \"Dose rate ↑\" },\n // x: { type: \"time\" },\n // color: { legend: true },\n fx: {\n interval: d3.utcHour.every(2),\n // tickFormat: (d) => `${d.getUTCFullYear()}’s`,\n label: null\n },\n marks: [\n Plot.dot(\n dataSelected.filter((d) => d.StartTime > fromDateTime),\n Plot.dodgeX(\"middle\", {\n fx: \"StartTime\",\n y: \"Value\",\n r: 1,\n opacity: 1,\n tip: \"x\"\n })\n )\n ]\n})","pinned":true,"hidden":false,"mode":"ojs"},{"id":1131,"value":"// histogram = Plot.plot({\n// x: {\n// type: \"linear\",\n// tickFormat: \"~s\",\n// label: \"Dose rate\"\n// },\n// marks: [\n// Plot.rectY(\n// dataSelected,\n// Plot.binX({ y: \"count\" }, { x: \"Value\", tip: true, thresholds: 20 })\n// ),\n// Plot.ruleY([0])\n// ]\n// })","pinned":false,"hidden":false,"mode":"ojs"},{"id":1139,"value":"Plot.plot({\n y: {\n type: \"linear\",\n tickFormat: \"~s\",\n label: \"Dose rate\"\n },\n fx: {\n interval: d3.utcDay.every(1),\n // tickFormat: (d) => `${d.getUTCFullYear()}’s`,\n label: null\n },\n // fx: {\n // transform: (d) => timeScale(d),\n // label: \"Time →\",\n // reverse: false,\n // domain: rangeTime\n // },\n // facet: {\n // data: dataSelected,\n // // y: \"depth\",\n // x: \"StartTime\",\n // marginLeft: 100\n // },\n marks: [\n Plot.rectX(\n dataSelected,\n Plot.binY(\n { x: \"count\" },\n { y: \"Value\", tip: true, thresholds: 20, facet: \"include\" }\n )\n ),\n Plot.ruleX([0])\n ]\n})","pinned":true,"hidden":false,"mode":"ojs"},{"id":1146,"value":"time = dataSelected.map((d) => d.StartTime)","pinned":true,"hidden":false,"mode":"ojs"},{"id":1144,"value":"// binsTime = d3.bin()(time)","pinned":true,"hidden":false,"mode":"ojs"},{"id":1152,"value":"// formatTime = d3.timeFormat(\"%Y-%m-%dT%H:%M:%S.%LZ\")\nformatTime = d3.timeFormat(\"%dT%H:%M:%S.%LZ\")","pinned":true,"hidden":false,"mode":"ojs"},{"id":1150,"value":"// rangeTime = binsTime.map(\n// (d) => `${formatTime(d3.min(d))} - ${formatTime(d3.max(d))}`\n// )","pinned":true,"hidden":false,"mode":"ojs"},{"id":1173,"value":"binSize = 72 * 60 * 60 * 1000 // 1 hour in milliseconds","pinned":true,"hidden":false,"mode":"ojs"},{"id":1175,"value":"minTime = time.reduce((min, time) => Math.min(min, time), Infinity)","pinned":true,"hidden":false,"mode":"ojs"},{"id":1178,"value":"maxTime = time.reduce((max, time) => Math.max(max, time), -Infinity)","pinned":true,"hidden":false,"mode":"ojs"},{"id":1181,"value":"// Generate bins using d3.bin\nbinsTime = d3\n .bin()\n .domain([minTime, maxTime])\n .thresholds(d3.range(minTime, maxTime + binSize, binSize))(time)","pinned":true,"hidden":false,"mode":"ojs"},{"id":1188,"value":"rangeTime = binsTime.map(\n (d) => `${formatTime(d3.min(d))} - ${formatTime(d3.max(d))}`\n)","pinned":true,"hidden":false,"mode":"ojs"},{"id":1191,"value":"domainTime = binsTime.map((d) => d3.min(d)).slice(1)","pinned":true,"hidden":false,"mode":"ojs"},{"id":1193,"value":"timeScale = d3.scaleThreshold().domain(domainTime).range(rangeTime)","pinned":true,"hidden":false,"mode":"ojs"},{"id":1089,"value":"Plot.plot({\n height: 4000,\n axis: null,\n y: { domain: [0, step] },\n color: { scheme: \"YlGnBu\" },\n facet: { data: dataSelected, y: \"Name\" },\n marks: [\n d3.range(bands).map((i) =>\n Plot.areaY(dataSelected, {\n x: \"StartTime\",\n y: (d) => d.Value - i * step,\n fill: i,\n clip: true,\n sort: \"StartTime\"\n })\n ),\n Plot.text(\n dataSelectedScaled,\n Plot.selectFirst({\n text: \"Name\",\n frameAnchor: \"top-left\",\n dx: 6,\n dy: 6\n })\n ),\n Plot.frame()\n ]\n})","pinned":true,"hidden":false,"mode":"ojs"},{"id":1098,"value":"dataSelectedScaled = dataSelected.map((d) => ({\n ...d,\n ValueScaled: d.Value * Math.pow(10, 12)\n}))","pinned":true,"hidden":false,"mode":"ojs"},{"id":1085,"value":"bands = 7","pinned":true,"hidden":false,"mode":"ojs"},{"id":1087,"value":"step = d3.max(dataSelected, (d) => d.Value) / bands","pinned":true,"hidden":false,"mode":"ojs"},{"id":82,"value":"## Data loading","pinned":false,"hidden":false,"mode":"md"},{"id":574,"value":"dataSelected = data.filter((d) =>\n turf.booleanWithin(turf.point([d.Longitude, d.Latitude]), circle)\n)","pinned":true,"hidden":false,"mode":"ojs"},{"id":885,"value":"dataSelected.map((d) => d.EndTime)","pinned":true,"hidden":false,"mode":"ojs"},{"id":767,"value":"features = turf.featureCollection(data.map((d) => turf.point([d.Longitude, d.Latitude])))","pinned":true,"hidden":false,"mode":"ojs"},{"id":764,"value":"bbox = turf.envelope(features)","pinned":true,"hidden":false,"mode":"ojs"},{"id":514,"value":"center = rows.length == 1 ? [rows[0].Longitude, rows[0].Latitude] : false","pinned":false,"hidden":false,"mode":"ojs"},{"id":542,"value":"circle = d3\n .geoCircle()\n .center(center)\n .radius((kms / (6371 * Math.PI * 2)) * 360)\n .precision(2)()","pinned":true,"hidden":false,"mode":"ojs"},{"id":396,"value":"values = data.map((d) => d.Value)","pinned":false,"hidden":false,"mode":"ojs"},{"id":478,"value":"// locations = getLocations(parsed)","pinned":true,"hidden":false,"mode":"ojs"},{"id":383,"value":"// data = getData(parsed)","pinned":true,"hidden":false,"mode":"ojs"},{"id":898,"value":"data\n .map((d) => String(d.EndTime))\n .filter((value, index, self) => self.indexOf(value) === index)","pinned":true,"hidden":false,"mode":"ojs"},{"id":481,"value":"parsed = parse(fr_irsnfr_202307032200_doserates)","pinned":true,"hidden":false,"mode":"ojs"},{"id":728,"value":"metadata = parsed.Report.Identification","pinned":true,"hidden":false,"mode":"ojs"},{"id":8,"value":"fr_irsnfr_202307032200_doserates = FileAttachment(\n \"FR_irsnfr_202307032200_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":426,"value":"fr_irsnfr_202307040200_doserates = FileAttachment(\n \"FR_irsnfr_202307040200_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":70,"value":"## Imports","pinned":false,"hidden":false,"mode":"md"},{"id":20,"value":"import { parse, getData, getLocations } from \"@francobollo/irix-parser\"","pinned":true,"hidden":false,"mode":"ojs"},{"id":518,"value":"turf = require(\"@turf/turf@6\")","pinned":true,"hidden":false,"mode":"ojs"},{"id":390,"value":"world = (\n await fetch(\"https://cdn.jsdelivr.net/npm/world-atlas@2/land-50m.json\")\n).json()","pinned":true,"hidden":false,"mode":"ojs"},{"id":391,"value":"land = topojson.feature(world, world.objects.land)","pinned":false,"hidden":false,"mode":"ojs"},{"id":916,"value":"fr_irsnfr_202307040100_doserates = FileAttachment(\n \"FR_irsnfr_202307040100_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":917,"value":"fr_irsnfr_202307040200_doserates1 = FileAttachment(\n \"FR_irsnfr_202307040200_DoseRates@1.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":918,"value":"fr_irsnfr_202307040300_doserates = FileAttachment(\n \"FR_irsnfr_202307040300_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":919,"value":"fr_irsnfr_202307040400_doserates = FileAttachment(\n \"FR_irsnfr_202307040400_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":920,"value":"fr_irsnfr_202307040500_doserates = FileAttachment(\n \"FR_irsnfr_202307040500_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":921,"value":"fr_irsnfr_202307040600_doserates = FileAttachment(\n \"FR_irsnfr_202307040600_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":922,"value":"fr_irsnfr_202307040700_doserates = FileAttachment(\n \"FR_irsnfr_202307040700_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":923,"value":"fr_irsnfr_202307040800_doserates = FileAttachment(\n \"FR_irsnfr_202307040800_DoseRates.xml\"\n).text()","pinned":false,"hidden":false,"mode":"ojs"},{"id":933,"value":"data = _.flatten(\n [\n fr_irsnfr_202307040800_doserates,\n fr_irsnfr_202307040700_doserates,\n fr_irsnfr_202307040600_doserates,\n fr_irsnfr_202307040500_doserates,\n fr_irsnfr_202307040400_doserates,\n fr_irsnfr_202307040300_doserates,\n fr_irsnfr_202307040200_doserates1,\n fr_irsnfr_202307040100_doserates\n ].map((d) => getData(parse(d)))\n)","pinned":true,"hidden":false,"mode":"ojs"},{"id":959,"value":"locations = _.flatten(\n [\n fr_irsnfr_202307040800_doserates,\n fr_irsnfr_202307040700_doserates,\n fr_irsnfr_202307040600_doserates,\n fr_irsnfr_202307040500_doserates,\n fr_irsnfr_202307040400_doserates,\n fr_irsnfr_202307040300_doserates,\n fr_irsnfr_202307040200_doserates1,\n fr_irsnfr_202307040100_doserates\n ].map((d) => getLocations(parse(d)))\n)","pinned":true,"hidden":false,"mode":"ojs"}],"files":"$W2f","stdlib":"1","titling":"auto"}