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Sergei Pond
@spond
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Published
172
4
National and International Dimensions of HIV-1 Sequence Clusters in a Northern California Clinical Cohort
Sergei Pond
May 19, 2019
3
Molecular clock dating of reservoir strains
Sergei Pond
Nov 21, 2018
3
Multiple group RELAX analysis
Sergei Pond
Mar 20, 2019
Multiple group RELAX analysis
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Sergei Pond
Mar 12, 2019
1
SD-PIRC NGS quality control
Sergei Pond
Mar 26, 2019
SD-PIRC sequence QA
Sergei Pond
Feb 7, 2019
Usual vs unusual mutation analyses
Sergei Pond
May 20, 2024
Dating OGV HIV strains
Sergei Pond
Nov 8, 2019
1
1
Node-level Slatkin-Maddison Support
Sergei Pond
Mar 20, 2020
Preliminary analysis of the CONDESA molecular transmission network
Fork
Sergei Pond
May 13, 2019
Visualizing pairwise TN93 distances
Sergei Pond
Aug 20, 2019
Preliminary analysis of the San Diego PIRC molecular transmission network
Fork
Sergei Pond
May 31, 2019
Coin tosses
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Sergei Pond
Feb 8, 2023
1
Two sample t-test
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Sergei Pond
Jun 11, 2019
2
K-means clustering algorithm
Sergei Pond
Nov 22, 2022
4
PAML-style analyses summary
Sergei Pond
Jul 5, 2019
HIV transmission network analysis
Sergei Pond
Jun 7, 2021
Untitled
Sergei Pond
Aug 29, 2019
2
Figure 1 mtDNA paper
Fork
Sergei Pond
Oct 1, 2019
Figure 1 mtDNA paper
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Sergei Pond
Oct 3, 2019
Clustering faculty applications
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Sergei Pond
Nov 18, 2019
Research and funding summary
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Sergei Pond
Jul 3, 2024
Multi-hit simulations
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Sergei Pond
Jan 14, 2021
1
Plotting MEME EBF on branches at individual sites
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Sergei Pond
Mar 5, 2021
Multi-hit simulations
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Sergei Pond
Mar 8, 2020
1
Example alignments for multihit paper
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Sergei Pond
Feb 5, 2020
Multihit paper empirical results for substitutions
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Sergei Pond
Mar 9, 2020
1
Multihit paper empirical results
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Sergei Pond
Jan 12, 2021
Genomic diversity and divergence of SARS-CoV-2/COVID-19
Sergei Pond
May 30, 2020
3
Notice: this page has been deprecated in favor of a fully redesigned and updated version 2
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Sergei Pond
Dec 22, 2020
11
COVID table export
Sergei Pond
Mar 30, 2020
Untitled
Sergei Pond
Apr 7, 2020
CpG deficiency in beta-coronaviruses
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Sergei Pond
Apr 22, 2020
SRRs with many mid-range variants (multiple infections)?
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Sergei Pond
Sep 11, 2020
Internal FEL on SARS-CoV-2 data
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Sergei Pond
May 4, 2020
Summary of SARS-CoV-2 genomic diversity
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Sergei Pond
Sep 11, 2020
Contrast FEL
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Sergei Pond
Jul 31, 2020
1
Testing recombination in the pandemic SARS-CoV-2 strains
Sergei Pond
Feb 9, 2021
2
Genomic divergence of SARS-CoV-2 over time
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Sergei Pond
Jun 29, 2020
Mutation arrivals in SARS-CoV-2 genomes
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Sergei Pond
Jun 18, 2020
